PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0163300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 366aa    MW: 38509.1 Da    PI: 6.72
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0163300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09186234355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  ORGLA08G0163300.1 186 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 234
                        58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-17180251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.90E-11181238No hitNo description
PROSITE profilePS5088815.51183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16185251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-7186234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDANGGNGFG VESNASAVHG GMAMAWQWHG GQMSGGSSCA AAPPPVQQPA MDSLAWSSTV  60
SPSTGAATAA SGAGFLLPPA AVRGGFGSFP VNSGGIVEPA GDCSSESKKK RRSDEIAGTD  120
HANASNALAD SGNETECSKD ANGEVIGPPA TAAAGGKSKG KGAKDAGEAQ KEGYSHVRAR  180
KGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKVTGKA LMLDEIINYV QSLQRQVEFL  240
SMKLSAVNPR IDLDIESLVN NSKDVLRFPG QPSTAPMGFS FSTEMMPGLQ LSRPGILQGG  300
VHGMINPDVF TSLMQKQQQN DKGAFREPQM HQTLDGSFRN TAQMPYPQVM SSEELSIRQD  360
QDGFHM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045571e-180AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBankAP0149641e-180AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-180CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650276.10.0PREDICTED: transcription factor bHLH79
SwissprotQ9CAA93e-50BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A0D3H1K50.0A0A0D3H1K5_9ORYZ; Uncharacterized protein
TrEMBLI1QJN20.0I1QJN2_ORYGL; Uncharacterized protein
STRINGORGLA08G0163300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.31e-46cryptochrome-interacting basic-helix-loop-helix 5